Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs78028836 chr12:12485448 G/A 2.1E-8 171 25.17 28.47 7.2 KM Plot
PCPG rs78028911 chr7:158852932 A/AC 0.000211 173 25.4 23.35 41.87 KM Plot
PCPG rs7802896 chr7:158682566 G/A 0 177 25.53 20.37 3.17 KM Plot
PCPG rs7803188 chr7:158682802 G/C 0 176 25.53 21.9 3.17 KM Plot
PCPG rs78045362 chr5:50319835 A/G 1.69E-5 170 24.62 32.92 13.5 KM Plot
PCPG rs78067009 chr12:124019231 C/T 0.000484 172 25.87 19.2 20.13 KM Plot
PCPG rs7807070 chr7:158683022 G/A 0 175 25.53 20.37 3.17 KM Plot
PCPG rs78072538 chr12:124074848 A/T 0.000427 174 25.87 19.2 20.13 KM Plot
PCPG rs78075679 chr5:171530844 C/T 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs78092914 chr17:1410457 G/C 1.46E-5 174 25.05 25 25.17 KM Plot
PCPG rs78109255 chr16:8763608 C/T 0 178 25.47 23.53 3.17 KM Plot
PCPG rs78121408 chr12:56684798 C/T 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs78124116 chr15:39756236 A/T 0.00047 175 25 26.47 26.33 KM Plot
PCPG rs78137576 chr7:158681553 C/T 0 178 25.53 21.9 3.17 KM Plot
PCPG rs78144687 chr17:1441661 T/C 1.56E-5 173 25.4 26.73 13.18 KM Plot